ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048126 Col6a3 10090 - 1:90765923-90843971 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056925 Col6a3-201 90765923-90843971 protein_coding
  ENSMUST00000097653 Col6a3-001 90766860-90843952 protein_coding
  ENSMUST00000130846 Col6a3-002 90802473-90843928 protein_coding
  ENSMUST00000136916 Col6a3-004 90791467-90807982 retained_intron
  ENSMUST00000145750 Col6a3-003 90793892-90794721 retained_intron
  ENSMUST00000150769 Col6a3-005 90767389-90773215 retained_intron
  ENSMUST00000187753 Col6a3-006 90822271-90843971 protein_coding
  ENSMUST00000188587 Col6a3-202 90765923-90843971 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000097653ENSMUST00000130846ENSMUST00000150769
Transcript ID C166 Tie2+ EC mES
ENSMUST00000097653 2.767±1.84 0.374±0.11 0.042±0.01
ENSMUST00000130846 N/A N/A 0.024±0.00
ENSMUST00000150769 N/A N/A 0.164±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008L9 CIL_0008L9_0002 VISTA
CIL_0000XQ CIL_0000XQ_0002 CGP
CIL_0007RW CIL_0007RW_0002 VISTA
CIL_000439 CIL_000439_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005581 IDA collagen trimer
GO:0005615 IDA extracellular space
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0031012 IDA extracellular matrix
GO:0031982 IEA vesicle
GO:0042383 IDA sarcolemma
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077139 col6a3 protein_coding Danio_rerio
ENSG00000163359 COL6A3 collagen, type VI, alpha 3 protein_coding Homo_sapiens

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