ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: sodium channel, voltage-gated, type IX, alpha subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169432 SCN9A 9606 - 2:166195185-166375993 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303354 SCN9A-201 166195194-166375987 protein_coding
  ENST00000409435 SCN9A-004 166198672-166311756 protein_coding
  ENST00000409672 SCN9A-001 166195185-166375993 protein_coding
  ENST00000452182 SCN9A-003 166281760-166306571 protein_coding
  ENST00000454569 SCN9A-002 166281760-166306571 protein_coding
  ENST00000472119 SCN9A-006 166302619-166305920 retained_intron

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000303354ENST00000409435ENST00000409672ENST00000452182ENST00000454569
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000303354 0.023±0.00 0.028±0.05 N/A 0.019±0.00 0.109±0.09
ENST00000409435 N/A 0.136±0.08 N/A N/A 0.188±0.14
ENST00000409672 0.023±0.00 0.031±0.05 0.386±0.00 0.020±0.00 0.148±0.09
ENST00000452182 N/A 0.155±0.00 N/A N/A 0.285±0.00
ENST00000454569 N/A N/A N/A N/A 0.165±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0006CK CIL_0006CK_0001 CGP
CIL_0006CV CIL_0006CV_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA:IBA voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0006814 TAS:IEA sodium ion transport
GO:0006954 IEA inflammatory response
GO:0009636 IEA response to toxic substance
GO:0009791 IEA post-embryonic development
GO:0016020 IEA membrane
GO:0019228 IBA neuronal action potential
GO:0031402 IEA sodium ion binding
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA:IBA sodium ion transmembrane transport
GO:0048266 IEA behavioral response to pain
GO:0055085 IEA transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062744 scn1lab protein_coding Danio_rerio
ENSMUSG00000075316 Scn9a protein_coding Mus_musculus

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