ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: tripartite motif containing 56
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169871 TRIM56 9606 + 7:101085439-101091736 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306085 TRIM56-001 101085439-101090628 protein_coding
  ENST00000412507 TRIM56-002 101085522-101091736 protein_coding
  ENST00000467847 TRIM56-003 101086785-101087508 retained_intron
  ENST00000487252 TRIM56-004 101089611-101090624 processed_transcript

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHUVECENST00000306085ENST00000412507ENST00000467847ENST00000487252
Transcript ID BECs HAoEC HHSEC HUVEC
ENST00000306085 0.489±0.00 2.509±0.72 N/A 1.316±0.93
ENST00000412507 0.929±0.00 1.223±0.00 N/A N/A
ENST00000467847 N/A N/A N/A 1.686±1.32
ENST00000487252 2.354±0.00 2.818±0.65 1.948±0.00 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 ISS cytoplasm
GO:0005829 TAS cytosol
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032479 TAS regulation of type I interferon production
GO:0032481 TAS positive regulation of type I interferon production
GO:0032608 ISS interferon-beta production
GO:0034340 ISS response to type I interferon
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0046597 IEA negative regulation of viral entry into host cell
GO:0046872 IEA metal ion binding
GO:0051607 ISS defense response to virus
GO:0070534 ISS protein K63-linked ubiquitination
GO:1902187 IEA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000043279 Trim56 protein_coding Mus_musculus

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