ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: RNA binding motif protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173933 RBM4 9606 + 11:66638617-66666682 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310092 RBM4-001 66638617-66646469 protein_coding
  ENST00000396053 RBM4-008 66638667-66666682 protein_coding
  ENST00000398692 RBM4-010 66638698-66646468 protein_coding
  ENST00000408993 RBM4-002 66638672-66646452 protein_coding
  ENST00000409406 RBM4-003 66638935-66646467 protein_coding
  ENST00000483858 RBM4-007 66638698-66641192 protein_coding
  ENST00000506523 RBM4-009 66638718-66649930 protein_coding
  ENST00000510173 RBM4-014 66638705-66644089 protein_coding
  ENST00000515838 RBM4-015 66643750-66646468 processed_transcript
  ENST00000528039 RBM4-012 66638716-66646468 processed_transcript
  ENST00000530235 RBM4-013 66638720-66646439 protein_coding
  ENST00000532968 RBM4-011 66638727-66640289 protein_coding
  ENST00000578778 RBM4-019 66638691-66652372 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHUVECENST00000310092ENST00000398692ENST00000408993ENST00000515838ENST00000528039
Transcript ID BECs HAoEC HHSEC HUVEC
ENST00000310092 45.465±0.00 30.496±7.20 N/A 49.678±25.25
ENST00000398692 N/A N/A N/A 66.709±11.09
ENST00000408993 N/A 24.656±5.01 N/A 22.574±1.36
ENST00000515838 114.007±9.97 N/A 43.796±0.00 N/A
ENST00000528039 65.584±0.00 67.221±4.53 54.304±0.00 93.786±13.37

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0003YM CIL_0003YM_0004 CGP
CIL_0003YM CIL_0003YM_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0002190 IDA cap-independent translational initiation
GO:0002192 IDA IRES-dependent translational initiation
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006396 TAS RNA processing
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010494 IDA cytoplasmic stress granule
GO:0016607 IDA nuclear speck
GO:0017148 IDA negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0032055 IDA negative regulation of translation in response to stress
GO:0035198 IDA miRNA binding
GO:0035278 IDA negative regulation of translation involved in gene silencing by miRNA
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0044822 IDA poly(A) RNA binding
GO:0045947 IDA negative regulation of translational initiation
GO:0046685 IDA response to arsenic-containing substance
GO:0046822 IDA regulation of nucleocytoplasmic transport
GO:0051149 IDA positive regulation of muscle cell differentiation
GO:0051403 IDA stress-activated MAPK cascade
GO:0097157 IDA pre-mRNA intronic binding
GO:0097158 IDA pre-mRNA intronic pyrimidine-rich binding
GO:0097167 ISS circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022129 rbm4.3 protein_coding Danio_rerio
ENSDARG00000036386 rbm4.1 protein_coding Danio_rerio
ENSDARG00000055080 rbm4.2 protein_coding Danio_rerio
ENSMUSG00000094936 Rbm4 protein_coding Mus_musculus
ENSMUSG00000096370 Gm21992 protein_coding Mus_musculus

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