ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: TSEN54 tRNA splicing endonuclease subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182173 TSEN54 9606 + 17:75516060-75524739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333213 TSEN54-001 75516525-75524739 protein_coding
  ENST00000434205 TSEN54-005 75516060-75519047 protein_coding
  ENST00000545228 TSEN54-012 75521993-75524693 protein_coding
  ENST00000577197 TSEN54-014 75523602-75524733 retained_intron
  ENST00000578415 TSEN54-008 75516812-75522115 nonsense_mediated_decay
  ENST00000579449 TSEN54-013 75522826-75524420 retained_intron
  ENST00000580013 TSEN54-010 75516536-75521438 processed_transcript
  ENST00000583173 TSEN54-007 75516561-75523287 nonsense_mediated_decay
  ENST00000583454 TSEN54-006 75516526-75517475 retained_intron
  ENST00000583634 TSEN54-009 75516970-75517651 retained_intron
  ENST00000583818 TSEN54-011 75516795-75521897 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000333213ENST00000545228ENST00000577197ENST00000578415ENST00000579449ENST00000583173
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000333213 4.598±0.00 5.802±3.90 6.668±0.00 4.009±0.00 4.714±3.38
ENST00000545228 5.096±0.22 N/A 5.612±0.00 N/A 1.784±1.04
ENST00000577197 17.749±6.57 16.852±8.70 41.323±0.00 4.114±0.00 4.435±2.73
ENST00000578415 N/A 3.404±0.04 N/A 2.420±0.00 N/A
ENST00000579449 N/A N/A 12.483±0.00 N/A N/A
ENST00000583173 N/A 9.580±4.92 N/A N/A 0.312±0.08

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008PW CIL_0008PW_0001 VISTA
CIL_0007IY CIL_0007IY_0001 CGP
CIL_0007IP CIL_0007IP_0001 CGP

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006388 IDA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036844 tsen54 protein_coding Danio_rerio
ENSMUSG00000020781 Tsen54 protein_coding Mus_musculus

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