ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: RAB40C, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197562 RAB40C 9606 + 16:589357-629272 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248139 RAB40C-001 590089-629272 protein_coding
  ENST00000509637 RAB40C-006 590296-625993 nonsense_mediated_decay
  ENST00000535977 RAB40C-201 589357-629271 protein_coding
  ENST00000538492 RAB40C-202 590077-629271 protein_coding
  ENST00000539661 RAB40C-203 589669-629271 protein_coding
  ENST00000561781 RAB40C-002 625614-629272 retained_intron
  ENST00000563109 RAB40C-003 590332-627583 protein_coding
  ENST00000564703 RAB40C-005 616645-626117 protein_coding
  ENST00000565511 RAB40C-004 590242-626083 nonsense_mediated_decay
  ENST00000566290 RAB40C-008 589669-627415 protein_coding
  ENST00000568586 RAB40C-009 590068-626121 protein_coding
  ENST00000569575 RAB40C-007 589357-626026 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000248139ENST00000535977ENST00000538492ENST00000539661ENST00000561781
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000248139 2.344±0.00 2.020±1.13 N/A N/A 2.785±2.48
ENST00000535977 N/A N/A N/A N/A 0.297±0.16
ENST00000538492 6.400±0.44 7.295±3.34 6.202±0.00 6.214±0.00 6.219±4.40
ENST00000539661 N/A N/A N/A N/A 0.951±0.29
ENST00000561781 5.317±2.70 1.727±1.11 11.252±0.00 1.080±0.00 1.332±0.70

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0019003 IEA GDP binding
GO:0035556 IEA intracellular signal transduction
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061208 rab40c protein_coding Danio_rerio
ENSMUSG00000025730 Rab40c protein_coding Mus_musculus

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