ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198563 DDX39B 9606 - 6:31530219-31542448 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376177 DDX39B-006 31530219-31540536 protein_coding
  ENST00000396172 DDX39B-001 31530219-31542448 protein_coding
  ENST00000417023 DDX39B-020 31530779-31534511 protein_coding
  ENST00000418897 DDX39B-011 31538831-31541991 protein_coding
  ENST00000419020 DDX39B-010 31538882-31542003 protein_coding
  ENST00000419338 DDX39B-018 31535395-31541484 protein_coding
  ENST00000427214 DDX39B-017 31532780-31541531 protein_coding
  ENST00000428098 DDX39B-009 31535388-31542018 protein_coding
  ENST00000428450 DDX39B-013 31536609-31541989 protein_coding
  ENST00000431908 DDX39B-019 31531302-31541981 protein_coding
  ENST00000449757 DDX39B-016 31536623-31541729 protein_coding
  ENST00000456662 DDX39B-014 31535407-31541937 protein_coding
  ENST00000456976 DDX39B-012 31538819-31541986 protein_coding
  ENST00000458640 DDX39B-002 31530219-31542448 protein_coding
  ENST00000462256 DDX39B-004 31530219-31542017 retained_intron
  ENST00000462421 DDX39B-003 31530243-31530935 processed_transcript
  ENST00000474961 DDX39B-007 31530219-31531744 retained_intron
  ENST00000478365 DDX39B-021 31531116-31531671 retained_intron
  ENST00000481456 DDX39B-005 31532413-31542001 retained_intron
  ENST00000482195 DDX39B-008 31531274-31542401 retained_intron
  ENST00000484566 DDX39B-022 31530219-31535475 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000417023ENST00000428098ENST00000431908ENST00000458640ENST00000462256ENST00000474961ENST00000481456ENST00000484566
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000417023 211.732±51.80 130.635±0.13 411.605±0.00 N/A 169.814±35.27
ENST00000428098 N/A 93.587±23.76 N/A 114.022±0.00 83.706±4.30
ENST00000431908 N/A 72.259±9.24 N/A N/A N/A
ENST00000458640 N/A 37.032±0.70 N/A N/A 92.531±42.20
ENST00000462256 19.467±0.00 15.312±4.97 46.737±0.00 41.569±0.00 48.058±39.32
ENST00000474961 N/A N/A 91.829±0.00 N/A N/A
ENST00000481456 N/A 6.960±0.75 N/A N/A 18.382±13.13
ENST00000484566 306.029±10.24 102.117±29.34 N/A 98.240±0.00 84.795±11.26

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 IDA spliceosomal complex assembly
GO:0000346 IDA transcription export complex
GO:0000398 IGI mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005687 IDA U4 snRNP
GO:0005688 IDA U6 snRNP
GO:0005737 IDA cytoplasm
GO:0006200 IDA ATP catabolic process
GO:0006406 IGI mRNA export from nucleus
GO:0008152 IEA metabolic process
GO:0008186 IDA RNA-dependent ATPase activity
GO:0008380 IDA RNA splicing
GO:0010501 IDA RNA secondary structure unwinding
GO:0016787 IEA hydrolase activity
GO:0017070 IDA U6 snRNA binding
GO:0030621 IDA U4 snRNA binding
GO:0032786 IMP positive regulation of DNA-templated transcription, elongation
GO:0043008 IDA ATP-dependent protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046784 IDA viral mRNA export from host cell nucleus
GO:2000002 IMP negative regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036069 ddx39b protein_coding Danio_rerio
ENSMUSG00000019432 Ddx39b protein_coding Mus_musculus

Loading