ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019432 Ddx39b 10090 + 17:35241746-35253707 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068056 Ddx39b-001 35241746-35253707 protein_coding
  ENSMUST00000172549 Ddx39b-004 35242667-35253676 protein_coding
  ENSMUST00000173731 Ddx39b-006 35241870-35253680 protein_coding
  ENSMUST00000174164 Ddx39b-005 35241805-35249870 retained_intron
  ENSMUST00000174757 Ddx39b-002 35241778-35249025 protein_coding
  ENSMUST00000174795 Ddx39b-003 35241996-35243224 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000068056ENSMUST00000174164
Transcript ID C166 Tie2+ EC mES
ENSMUST00000068056 120.687±12.48 44.094±15.41 128.799±9.12
ENSMUST00000174164 30.576±7.12 N/A N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 IEA spliceosomal complex assembly
GO:0000346 IEA transcription export complex
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0004004 IEA ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005687 IEA U4 snRNP
GO:0005688 IEA U6 snRNP
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006406 IEA mRNA export from nucleus
GO:0008186 IEA RNA-dependent ATPase activity
GO:0008380 IEA RNA splicing
GO:0010501 IEA RNA secondary structure unwinding
GO:0017070 IEA U6 snRNA binding
GO:0030621 IEA U4 snRNA binding
GO:0032786 ISS positive regulation of DNA-templated transcription, elongation
GO:0043008 IEA ATP-dependent protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0046784 IEA viral mRNA export from host cell nucleus
GO:2000002 ISS negative regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036069 ddx39b protein_coding Danio_rerio
ENSG00000198563 DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B protein_coding Homo_sapiens

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