ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: spalt-like transcription factor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000256463 SALL3 9606 + 18:78980275-79002677 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000536229 SALL3-006 78991682-78997322 protein_coding
  ENST00000537592 SALL3-001 78980275-78999974 protein_coding
  ENST00000572928 SALL3-004 78985010-78992162 processed_transcript
  ENST00000573324 SALL3-003 78994798-79002677 protein_coding
  ENST00000575389 SALL3-002 78980275-78997631 protein_coding
  ENST00000616649 SALL3-201 78980275-78997397 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHUVECENST00000536229ENST00000537592ENST00000573324ENST00000575389ENST00000616649
Transcript ID BECs HAoEC HHSEC HUVEC
ENST00000536229 N/A 0.007±0.00 N/A N/A
ENST00000537592 N/A 0.024±0.01 N/A 0.008±0.00
ENST00000573324 N/A 0.100±0.02 N/A N/A
ENST00000575389 0.010±0.00 N/A 0.025±0.00 N/A
ENST00000616649 N/A 0.030±0.02 N/A 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000018 CIL_000018_0002 CGP
CIL_0007MA CIL_0007MA_0003 UCNEbase
CIL_0007YX CIL_0007YX_0001 VISTA
CIL_0008XA CIL_0008XA_0001 VISTA
CIL_00094I CIL_00094I_0001 VISTA
CIL_0008KF CIL_0008KF_0001 VISTA
CIL_0008IX CIL_0008IX_0001 VISTA
CIL_000015 CIL_000015_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021891 IEA olfactory bulb interneuron development
GO:0035136 IEA forelimb morphogenesis
GO:0035137 IEA hindlimb morphogenesis
GO:0045879 IEA negative regulation of smoothened signaling pathway
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057586 sall3b protein_coding Danio_rerio
ENSDARG00000079613 sall3a protein_coding Danio_rerio
ENSMUSG00000024565 Sall3 protein_coding Mus_musculus

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