ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000938 Hoxa10 10090 - 6:52231197-52240854 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000121043 Hoxa10-004 52231922-52240854 protein_coding
  ENSMUST00000125581 Hoxa10-001 52231197-52234939 protein_coding
  ENSMUST00000126402 Hoxa10-002 52231199-52233324 processed_transcript
  ENSMUST00000142611 Hoxa10-003 52232082-52240795 processed_transcript

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000121043ENSMUST00000125581ENSMUST00000126402ENSMUST00000142611
Transcript ID C166 Tie2+ EC mES
ENSMUST00000121043 0.084±0.02 0.920±0.71 N/A
ENSMUST00000125581 0.048±0.00 0.323±0.20 N/A
ENSMUST00000126402 0.034±0.02 1.285±1.08 0.377±0.21
ENSMUST00000142611 N/A N/A 0.106±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007OD CIL_0007OD_0003 UCNEbase
CIL_0008QL CIL_0008QL_0002 VISTA
CIL_000911 CIL_000911_0002 VISTA
CIL_000811 CIL_000811_0002 VISTA
CIL_00097P CIL_00097P_0002 VISTA
CIL_0003P7 CIL_0003P7_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IGI skeletal system development
GO:0003677 TAS DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IDA multicellular organismal development
GO:0007283 IGI spermatogenesis
GO:0007338 IGI single fertilization
GO:0008584 IGI male gonad development
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0030326 IGI embryonic limb morphogenesis
GO:0042826 IEA histone deacetylase binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060065 IGI uterus development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031337 hoxa10b protein_coding Danio_rerio
ENSG00000253293 HOXA10 homeobox A10 protein_coding Homo_sapiens

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