ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001911 Nfix 10090 - 8:84699876-84800344 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076715 Nfix-003 84708614-84800140 protein_coding
  ENSMUST00000099070 Nfix-002 84708616-84800344 protein_coding
  ENSMUST00000109762 Nfix-004 84708626-84774369 protein_coding
  ENSMUST00000109764 Nfix-001 84704712-84773396 protein_coding
  ENSMUST00000126806 Nfix-005 84713795-84800024 protein_coding
  ENSMUST00000132236 Nfix-006 84708634-84714068 retained_intron
  ENSMUST00000148644 Nfix-008 84699876-84708218 processed_transcript
  ENSMUST00000148746 Nfix-007 84704712-84707716 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000076715ENSMUST00000109764
Transcript ID C166 Tie2+ EC mES
ENSMUST00000076715 9.889±0.00 N/A N/A
ENSMUST00000109764 5.247±1.69 1.537±0.51 0.519±0.38

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007ZV CIL_0007ZV_0002 VISTA
CIL_0007VV CIL_0007VV_0002 VISTA
CIL_0004F9 CIL_0004F9_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0021549 IMP cerebellum development
GO:0021680 IMP cerebellar Purkinje cell layer development
GO:0021707 IMP cerebellar granule cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048708 IMP astrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043226 nfixa protein_coding Danio_rerio
ENSDARG00000061836 nfixb protein_coding Danio_rerio
ENSG00000008441 NFIX nuclear factor I/X (CCAAT-binding transcription factor) protein_coding Homo_sapiens

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