ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005698 Ctcf 10090 + 8:105636568-105682922 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005841 Ctcf-001 105636579-105682922 protein_coding
  ENSMUST00000128510 Ctcf-003 105636935-105664134 processed_transcript
  ENSMUST00000129388 Ctcf-004 105637066-105663851 processed_transcript
  ENSMUST00000132679 Ctcf-002 105636568-105681647 processed_transcript
  ENSMUST00000137735 Ctcf-005 105676011-105679567 processed_transcript
  ENSMUST00000156436 Ctcf-006 105676011-105680617 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000005841
Transcript ID C166 Tie2+ EC mES
ENSMUST00000005841 11.522±4.79 12.076±5.77 31.608±2.34

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0003LR CIL_0003LR_0003 CGP
CIL_0006LW CIL_0006LW_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000775 IEA chromosome, centromeric region
GO:0000793 IEA condensed chromosome
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IEA nucleolus
GO:0006306 IDA DNA methylation
GO:0006349 IDA regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007059 IEA chromosome segregation
GO:0009048 TAS dosage compensation by inactivation of X chromosome
GO:0010216 IMP maintenance of DNA methylation
GO:0010628 IMP positive regulation of gene expression
GO:0010629 IMP negative regulation of gene expression
GO:0016568 IEA chromatin modification
GO:0016584 IEA nucleosome positioning
GO:0031060 IMP regulation of histone methylation
GO:0035065 IMP regulation of histone acetylation
GO:0040029 IEA regulation of gene expression, epigenetic
GO:0040030 IEA regulation of molecular function, epigenetic
GO:0043035 IEA chromatin insulator sequence binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056621 ctcf protein_coding Danio_rerio
ENSG00000102974 CTCF CCCTC-binding factor (zinc finger protein) protein_coding Homo_sapiens

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