ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007035 Msh5 10090 - 17:35028605-35046745 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007250 Msh5-001 35028605-35046622 protein_coding
  ENSMUST00000097338 Msh5-008 35028605-35046726 protein_coding
  ENSMUST00000165329 Msh5-002 35039146-35046525 retained_intron
  ENSMUST00000172491 Msh5-011 35044100-35046520 nonsense_mediated_decay
  ENSMUST00000172536 Msh5-005 35028683-35046542 nonsense_mediated_decay
  ENSMUST00000173124 Msh5-009 35028605-35029868 processed_transcript
  ENSMUST00000173685 Msh5-010 35039146-35043767 retained_intron
  ENSMUST00000173928 Msh5-006 35043975-35045011 retained_intron
  ENSMUST00000174026 Msh5-003 35028609-35033291 nonsense_mediated_decay
  ENSMUST00000174556 Msh5-004 35037093-35046745 nonsense_mediated_decay
  ENSMUST00000174603 Msh5-007 35028683-35046542 nonsense_mediated_decay
  ENSMUST00000174741 Msh5-012 35043966-35046116 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000007250ENSMUST00000097338ENSMUST00000165329ENSMUST00000172536ENSMUST00000173124ENSMUST00000174026ENSMUST00000174556ENSMUST00000174603
Transcript ID C166 Tie2+ EC mES
ENSMUST00000007250 0.676±0.00 0.855±0.00 2.712±0.53
ENSMUST00000097338 2.582±0.67 N/A N/A
ENSMUST00000165329 N/A 0.760±0.66 N/A
ENSMUST00000172536 1.368±0.00 N/A N/A
ENSMUST00000173124 N/A 3.963±0.00 1.852±0.00
ENSMUST00000174026 N/A 0.129±0.00 2.626±0.00
ENSMUST00000174556 1.374±0.00 0.425±0.36 N/A
ENSMUST00000174603 N/A 0.077±0.00 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 IDA synaptonemal complex
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0006200 IBA ATP catabolic process
GO:0006298 IEA mismatch repair
GO:0007127 IMP meiosis I
GO:0007129 IMP synapsis
GO:0007131 IBA reciprocal meiotic recombination
GO:0007292 IMP female gamete generation
GO:0008094 IBA DNA-dependent ATPase activity
GO:0030983 IBA mismatched DNA binding
GO:0045143 IBA homologous chromosome segregation
GO:0051026 IBA chiasma assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077479 msh5 protein_coding Danio_rerio
ENSG00000204410 MSH5 mutS homolog 5 protein_coding Homo_sapiens
ENSG00000255152 MSH5-SAPCD1 MSH5-SAPCD1 readthrough (NMD candidate) protein_coding Homo_sapiens

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