ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009907 Vps4b 10090 - 1:106764071-106796728 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094646 Vps4b-001 106769430-106796728 protein_coding
  ENSMUST00000112736 Vps4b-002 106764071-106796667 protein_coding
  ENSMUST00000126057 Vps4b-003 106791100-106796577 retained_intron
  ENSMUST00000127606 Vps4b-004 106785804-106789949 processed_transcript
  ENSMUST00000147705 Vps4b-005 106777298-106782794 retained_intron
  ENSMUST00000190531 Vps4b-006 106779441-106780624 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000094646ENSMUST00000112736ENSMUST00000147705
Transcript ID C166 Tie2+ EC mES
ENSMUST00000094646 26.170±0.97 4.214±0.23 10.414±3.13
ENSMUST00000112736 N/A 1.391±0.00 N/A
ENSMUST00000147705 40.807±3.80 17.966±0.31 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0000B7 CIL_0000B7_0003 CGP
CIL_00076J CIL_00076J_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0005768 ISO endosome
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005774 IEA vacuolar membrane
GO:0005829 IDA cytosol
GO:0006200 IEA ATP catabolic process
GO:0006813 IDA potassium ion transport
GO:0007032 IMP endosome organization
GO:0007049 IEA cell cycle
GO:0008022 IEA protein C-terminus binding
GO:0010008 IEA endosome membrane
GO:0015031 IEA protein transport
GO:0016197 ISO endosomal transport
GO:0016887 ISO ATPase activity
GO:0030301 IMP cholesterol transport
GO:0032367 IEA intracellular cholesterol transport
GO:0032510 IEA endosome to lysosome transport via multivesicular body sorting pathway
GO:0033993 IEA response to lipid
GO:0050792 IEA regulation of viral process
GO:0051301 IEA cell division
GO:0070062 IEA extracellular vesicular exosome
GO:1902188 IEA positive regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069175 vps4b protein_coding Danio_rerio
ENSG00000119541 VPS4B vacuolar protein sorting 4 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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