ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015217 Hmgb3 10090 + X:71555918-71560676 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015361 Hmgb3-002 71555941-71560676 protein_coding
  ENSMUST00000072699 Hmgb3-001 71555918-71560676 protein_coding
  ENSMUST00000088874 Hmgb3-004 71555990-71560676 protein_coding
  ENSMUST00000114582 Hmgb3-003 71555928-71560676 protein_coding
  ENSMUST00000123100 Hmgb3-005 71556946-71559273 protein_coding
  ENSMUST00000132145 Hmgb3-006 71557783-71559773 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000015361ENSMUST00000072699ENSMUST00000114582
Transcript ID C166 Tie2+ EC mES
ENSMUST00000015361 9.111±3.84 25.160±21.50 N/A
ENSMUST00000072699 39.004±10.62 11.213±3.51 26.619±2.25
ENSMUST00000114582 9.080±1.70 13.004±0.91 10.643±1.55

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0009DG CIL_0009DG_0002 VISTA
CIL_0000UN CIL_0000UN_0003 CGP
CIL_0001AV CIL_0001AV_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0044822 IEA poly(A) RNA binding
GO:0045578 IDA negative regulation of B cell differentiation
GO:0045638 IDA negative regulation of myeloid cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006408 hmgb3b protein_coding Danio_rerio
ENSDARG00000056725 hmgb3a protein_coding Danio_rerio
ENSG00000029993 HMGB3 high mobility group box 3 protein_coding Homo_sapiens

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