ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: high mobility group box 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000029993 HMGB3 9606 + X:150980509-150990775 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325307 HMGB3-001 150983286-150990775 protein_coding
  ENST00000419110 HMGB3-002 150980509-150987877 protein_coding
  ENST00000430118 HMGB3-004 150985531-150987297 protein_coding
  ENST00000448905 HMGB3-201 150983406-150987932 protein_coding
  ENST00000455596 HMGB3-003 150983385-150987892 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000325307ENST00000419110ENST00000430118ENST00000448905ENST00000455596
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000325307 6.096±1.84 8.433±3.48 0.770±0.00 8.049±0.00 8.804±5.85
ENST00000419110 N/A 9.679±3.46 N/A 11.255±0.00 12.542±5.47
ENST00000430118 14.671±0.00 N/A N/A 12.524±0.00 10.290±2.37
ENST00000448905 N/A N/A N/A N/A 12.850±3.81
ENST00000455596 14.431±1.41 N/A 4.311±0.00 N/A 10.359±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0000UN CIL_0000UN_0002 CGP
CIL_0009DG CIL_0009DG_0001 VISTA
CIL_0001AV CIL_0001AV_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003690 ISS double-stranded DNA binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006310 ISS DNA recombination
GO:0007275 TAS multicellular organismal development
GO:0008301 ISS DNA binding, bending
GO:0044822 IDA poly(A) RNA binding
GO:0045578 IEA negative regulation of B cell differentiation
GO:0045638 IEA negative regulation of myeloid cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006408 hmgb3b protein_coding Danio_rerio
ENSDARG00000056725 hmgb3a protein_coding Danio_rerio
ENSMUSG00000015217 Hmgb3 protein_coding Mus_musculus

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