ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015748 Prpf3 10090 - 3:95830124-95855885 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015892 Prpf3-001 95830124-95855885 protein_coding
  ENSMUST00000159901 Prpf3-010 95830589-95835665 protein_coding
  ENSMUST00000160109 Prpf3-006 95847443-95853632 nonsense_mediated_decay
  ENSMUST00000160155 Prpf3-003 95830618-95849574 retained_intron
  ENSMUST00000161073 Prpf3-005 95849536-95855781 retained_intron
  ENSMUST00000161420 Prpf3-007 95843805-95846176 retained_intron
  ENSMUST00000161476 Prpf3-002 95830622-95855753 protein_coding
  ENSMUST00000161482 Prpf3-009 95836489-95845167 processed_transcript
  ENSMUST00000163059 Prpf3-008 95830622-95832808 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000015892ENSMUST00000159901ENSMUST00000160109ENSMUST00000160155ENSMUST00000161476ENSMUST00000163059
Transcript ID C166 Tie2+ EC mES
ENSMUST00000015892 6.655±1.51 3.489±1.52 1.372±0.27
ENSMUST00000159901 N/A 9.688±3.12 N/A
ENSMUST00000160109 N/A 9.286±0.00 N/A
ENSMUST00000160155 N/A 2.490±0.00 N/A
ENSMUST00000161476 4.362±1.58 1.294±0.64 1.694±0.18
ENSMUST00000163059 N/A 6.789±0.00 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000244 ISS spliceosomal tri-snRNP complex assembly
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0015030 IEA Cajal body
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0046540 IEA U4/U6 x U5 tri-snRNP complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086425 prpf3 protein_coding Danio_rerio
ENSG00000117360 PRPF3 pre-mRNA processing factor 3 protein_coding Homo_sapiens

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