ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016921 Srsf6 10090 + 2:162931528-162937121 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017065 Srsf6-002 162931562-162935026 nonsense_mediated_decay
  ENSMUST00000126163 Srsf6-003 162931661-162933509 protein_coding
  ENSMUST00000130411 Srsf6-001 162931528-162937121 protein_coding
  ENSMUST00000193611 Srsf6-004 162931528-162935208 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000017065ENSMUST00000130411ENSMUST00000193611
Transcript ID C166 Tie2+ EC mES
ENSMUST00000017065 76.054±7.69 28.765±12.10 N/A
ENSMUST00000130411 34.484±2.42 28.331±8.06 54.792±2.28
ENSMUST00000193611 14.991±4.10 4.088±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004E4 CIL_0004E4_0002 CGP
CIL_00044L CIL_00044L_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 ISS alternative mRNA splicing, via spliceosome
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005634 IEA nucleus
GO:0006376 ISS mRNA splice site selection
GO:0010837 ISS regulation of keratinocyte proliferation
GO:0016607 ISS nuclear speck
GO:0036002 ISS pre-mRNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0045617 ISS negative regulation of keratinocyte differentiation
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome
GO:0060501 ISO positive regulation of epithelial cell proliferation involved in lung morphogenesis
GO:0060548 ISO negative regulation of cell death
GO:0061041 ISS regulation of wound healing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013729 srsf6a protein_coding Danio_rerio
ENSDARG00000016783 srsf6b protein_coding Danio_rerio
ENSG00000124193 SRSF6 serine/arginine-rich splicing factor 6 protein_coding Homo_sapiens

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