ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020220 Vps13d 10090 - 4:144972622-145195005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020441 Vps13d-001 144972626-145190666 protein_coding
  ENSMUST00000036579 Vps13d-002 144972622-145195005 protein_coding
  ENSMUST00000130704 Vps13d-003 144972626-145091950 nonsense_mediated_decay
  ENSMUST00000132700 Vps13d-004 145176360-145194995 retained_intron
  ENSMUST00000141208 Vps13d-007 144980298-145054143 retained_intron
  ENSMUST00000142308 Vps13d-008 145052982-145058198 retained_intron
  ENSMUST00000144835 Vps13d-005 145016759-145051034 processed_transcript
  ENSMUST00000147511 Vps13d-006 144974926-144983961 processed_transcript
  ENSMUST00000155670 Vps13d-009 145069968-145072602 retained_intron
  ENSMUST00000185113 Vps13d-010 144974596-145155486 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000020441ENSMUST00000036579ENSMUST00000130704ENSMUST00000185113
Transcript ID C166 Tie2+ EC mES
ENSMUST00000020441 N/A 1.569±0.46 0.598±0.06
ENSMUST00000036579 N/A N/A 0.880±0.00
ENSMUST00000130704 N/A 1.846±0.78 0.808±0.00
ENSMUST00000185113 0.855±0.08 2.403±0.26 0.682±0.10

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0003MQ CIL_0003MQ_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017986 vps13d protein_coding Danio_rerio
ENSG00000048707 VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) protein_coding Homo_sapiens

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