| Transcript ID | C166 | Tie2+ EC | mES |
|---|---|---|---|
| ENSMUST00000022147 | 16.437±0.87 | 10.167±5.35 | 15.789±4.19 |
ANGIOGENES: A knowledge database for angiogenesis
Institute of Cardiovascular Regeneration, Goethe University Frankfurt
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | |||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSMUSG00000021645  |
Smn1 | 10090 | + |
13:100124852-100137690  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENSMUST00000022147 |
Smn1-001 | 100124852-100137690 | protein_coding | ||
| ENSMUST00000091321 |
Smn1-003 | 100124894-100137480 | protein_coding | ||
| ENSMUST00000125572 |
Smn1-007 | 100126125-100126935 | retained_intron | ||
| ENSMUST00000134514 |
Smn1-002 | 100124858-100127142 | retained_intron | ||
| ENSMUST00000135355 |
Smn1-010 | 100135393-100137450 | retained_intron | ||
| ENSMUST00000140745 |
Smn1-006 | 100124858-100127812 | nonsense_mediated_decay | ||
| ENSMUST00000143937 |
Smn1-008 | 100124924-100131174 | protein_coding | ||
| ENSMUST00000147306 |
Smn1-005 | 100131003-100137690 | retained_intron | ||
| ENSMUST00000151389 |
Smn1-009 | 100127875-100128630 | retained_intron | ||
Expression Patterns
|
Conserved Regions | ||
|---|---|---|
| Region ID | Sub-Region | Region Type |
| CIL_0004ZD | CIL_0004ZD_0003 | CGP |
| CIL_0004ZC | CIL_0004ZC_0002 | CGP |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000387 | ISS | spliceosomal snRNP assembly |
| GO:0003723 | IEA | RNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0005654 | ISS | nucleoplasm |
| GO:0005737 | IDA | cytoplasm |
| GO:0005829 | ISS | cytosol |
| GO:0006397 | IEA | mRNA processing |
| GO:0007019 | IMP | microtubule depolymerization |
| GO:0007409 | IMP | axonogenesis |
| GO:0015030 | ISS | Cajal body |
| GO:0032797 | ISS | SMN complex |
| GO:0034719 | ISS | SMN-Sm protein complex |
| GO:0097504 | ISS | Gemini of coiled bodies |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Description | Biotype | Species | |
|
ENSDARG00000018494
|
smn1 | protein_coding | Danio_rerio | ||
|
ENSG00000172062
|
SMN1 | survival of motor neuron 1, telomeric | protein_coding | Homo_sapiens | |
|
ENSG00000205571
|
SMN2 | survival of motor neuron 2, centromeric | protein_coding | Homo_sapiens | |
