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ANGIOGENES

ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: survival of motor neuron 1, telomeric
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172062 SMN1 9606 + 5:70925030-70953942 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351205 SMN1-201 70925104-70952006 protein_coding
  ENST00000380707 SMN1-001 70925030-70953012 protein_coding
  ENST00000503079 SMN1-008 70925030-70952347 protein_coding
  ENST00000506163 SMN1-007 70925095-70953040 protein_coding
  ENST00000506239 SMN1-003 70925075-70953016 nonsense_mediated_decay
  ENST00000507905 SMN1-005 70942508-70946079 nonsense_mediated_decay
  ENST00000510679 SMN1-004 70946089-70953942 processed_transcript
  ENST00000513228 SMN1-009 70942518-70946274 retained_intron
  ENST00000514951 SMN1-002 70925056-70952567 protein_coding
  ENST00000518504 SMN1-010 70942472-70946278 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000380707ENST00000506163ENST00000506239ENST00000510679ENST00000514951
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000380707 0.274±0.00 0.579±0.46 N/A N/A 0.632±0.38
ENST00000506163 0.253±0.14 0.438±0.18 1.797±0.00 0.390±0.00 0.479±0.21
ENST00000506239 N/A N/A N/A N/A 0.187±0.08
ENST00000510679 N/A N/A N/A N/A 0.781±0.31
ENST00000514951 0.374±0.00 0.834±0.23 4.175±0.00 1.249±0.00 0.760±0.38

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004ZD CIL_0004ZD_0001 CGP
CIL_0004ZC CIL_0004ZC_0001 CGP

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA:IEA cytoplasm
GO:0005829 IDA cytosol
GO:0006397 IEA mRNA processing
GO:0007399 IEA nervous system development
GO:0008219 IEA cell death
GO:0010467 TAS gene expression
GO:0015030 IDA Cajal body
GO:0016070 TAS RNA metabolic process
GO:0032797 IDA SMN complex
GO:0034660 TAS ncRNA metabolic process
GO:0034719 IDA SMN-Sm protein complex
GO:0042307 IDA positive regulation of protein import into nucleus
GO:0042802 IPI identical protein binding
GO:0097504 IDA Gemini of coiled bodies

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018494 smn1 protein_coding Danio_rerio
ENSMUSG00000021645 Smn1 protein_coding Mus_musculus

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