ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021990 Spata13 10090 + 14:60634001-60764556 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022566 Spata13-201 60634729-60764556 protein_coding
  ENSMUST00000159135 Spata13-004 60634755-60690893 processed_transcript
  ENSMUST00000159169 Spata13-006 60634001-60691367 protein_coding
  ENSMUST00000159476 Spata13-007 60702953-60706874 processed_transcript
  ENSMUST00000159729 Spata13-005 60634734-60691408 protein_coding
  ENSMUST00000160095 Spata13-008 60691975-60709569 protein_coding
  ENSMUST00000160973 Spata13-001 60634243-60764549 protein_coding
  ENSMUST00000162131 Spata13-009 60706733-60750016 protein_coding
  ENSMUST00000162939 Spata13-003 60751077-60762666 retained_intron
  ENSMUST00000162945 Spata13-002 60732906-60764549 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000022566ENSMUST00000162945
Transcript ID C166 Tie2+ EC mES
ENSMUST00000022566 N/A 2.867±0.44 4.474±1.53
ENSMUST00000162945 16.239±3.20 10.186±1.26 4.669±2.17

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008FK CIL_0008FK_0002 VISTA
CIL_0000G5 CIL_0000G5_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005085 ISS guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 ISS cytoplasm
GO:0016477 ISS cell migration
GO:0030027 ISS lamellipodium
GO:0030032 ISS lamellipodium assembly
GO:0030175 ISS filopodium
GO:0030334 ISS regulation of cell migration
GO:0030676 ISS Rac guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032587 ISS ruffle membrane
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043547 ISS positive regulation of GTPase activity
GO:0046847 ISS filopodium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062837 spata13 protein_coding Danio_rerio
ENSG00000182957 SPATA13 spermatogenesis associated 13 protein_coding Homo_sapiens
ENSG00000273167 RP11-307N16.6 protein_coding Homo_sapiens

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