ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025332 Kdm5c 10090 + X:152233020-152274535 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000082177 Kdm5c-004 152233272-152273772 protein_coding
  ENSMUST00000112584 Kdm5c-002 152233020-152273768 protein_coding
  ENSMUST00000112588 Kdm5c-001 152233229-152274535 protein_coding
  ENSMUST00000154938 Kdm5c-003 152233254-152246751 retained_intron
  ENSMUST00000155793 Kdm5c-006 152271913-152273396 protein_coding
  ENSMUST00000156114 Kdm5c-005 152269806-152271556 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000082177ENSMUST00000112584ENSMUST00000112588
Transcript ID C166 Tie2+ EC mES
ENSMUST00000082177 9.201±1.45 1.656±0.31 N/A
ENSMUST00000112584 7.671±1.69 2.033±0.33 N/A
ENSMUST00000112588 6.835±0.50 3.441±1.97 7.836±3.43

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00062O CIL_00062O_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032453 IEA histone demethylase activity (H3-K4 specific)
GO:0034720 IEA histone H3-K4 demethylation
GO:0042752 NAS regulation of circadian rhythm
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006124 kdm5c protein_coding Danio_rerio
ENSG00000126012 KDM5C lysine (K)-specific demethylase 5C protein_coding Homo_sapiens

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