ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028790 Khdrbs1 10090 - 4:129703164-129742303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066257 Khdrbs1-002 129713819-129742296 protein_coding
  ENSMUST00000129342 Khdrbs1-001 129703164-129742297 nonsense_mediated_decay
  ENSMUST00000139281 Khdrbs1-004 129728935-129742303 retained_intron
  ENSMUST00000139936 Khdrbs1-003 129703826-129713820 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000066257ENSMUST00000129342
Transcript ID C166 Tie2+ EC mES
ENSMUST00000066257 54.837±4.53 18.192±6.49 43.060±3.78
ENSMUST00000129342 N/A 9.714±1.57 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008AA CIL_0008AA_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0005070 IPI SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0007166 IDA cell surface receptor signaling pathway
GO:0008143 ISO poly(A) binding
GO:0008266 ISO poly(U) RNA binding
GO:0009967 IPI positive regulation of signal transduction
GO:0016020 ISS membrane
GO:0017124 IEA SH3 domain binding
GO:0032403 IEA protein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045948 ISS positive regulation of translational initiation
GO:0046831 IDA regulation of RNA export from nucleus
GO:0046833 ISS positive regulation of RNA export from nucleus
GO:0070618 IEA Grb2-Sos complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052856 khdrbs1a protein_coding Danio_rerio
ENSDARG00000070475 khdrbs1b protein_coding Danio_rerio
ENSG00000121774 KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 protein_coding Homo_sapiens

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