ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029478 Ncor2 10090 - 5:125017153-125179219 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055256 Ncor2-003 125017835-125124900 protein_coding
  ENSMUST00000086083 Ncor2-004 125017162-125179053 protein_coding
  ENSMUST00000111393 Ncor2-001 125017155-125179180 protein_coding
  ENSMUST00000111394 Ncor2-008 125017835-125179202 protein_coding
  ENSMUST00000111398 Ncor2-002 125017153-125179219 protein_coding
  ENSMUST00000111402 Ncor2-201 125017153-125179214 protein_coding
  ENSMUST00000125053 Ncor2-007 125017153-125042812 protein_coding
  ENSMUST00000130742 Ncor2-010 125025102-125026087 retained_intron
  ENSMUST00000134404 Ncor2-005 125030800-125058400 protein_coding
  ENSMUST00000134819 Ncor2-009 125025096-125026924 protein_coding
  ENSMUST00000138890 Ncor2-012 125017893-125025522 protein_coding
  ENSMUST00000144354 Ncor2-011 125018233-125023220 retained_intron
  ENSMUST00000149968 Ncor2-006 125047802-125055988 retained_intron
  ENSMUST00000199561 Ncor2-013 125050940-125058411 protein_coding
  ENSMUST00000200297 Ncor2-014 125018135-125025061 nonsense_mediated_decay

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000086083ENSMUST00000111393ENSMUST00000111398ENSMUST00000125053
Transcript ID C166 Tie2+ EC mES
ENSMUST00000086083 4.023±1.56 2.467±0.46 N/A
ENSMUST00000111393 6.016±1.74 1.360±0.00 N/A
ENSMUST00000111398 N/A 1.177±0.00 7.362±2.73
ENSMUST00000125053 N/A 3.123±0.34 16.212±2.18

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004PN CIL_0004PN_0002 CGP
CIL_000399 CIL_000399_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IEA chromatin
GO:0001012 IEA RNA polymerase II regulatory region DNA binding
GO:0001701 IMP in utero embryonic development
GO:0003007 IGI heart morphogenesis
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003714 IMP transcription corepressor activity
GO:0005112 IEA Notch binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007595 IEA lactation
GO:0010243 IEA response to organonitrogen compound
GO:0016020 IEA membrane
GO:0016363 IEA nuclear matrix
GO:0016604 IDA nuclear body
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0017053 IEA transcriptional repressor complex
GO:0021537 IMP telencephalon development
GO:0021846 IMP cell proliferation in forebrain
GO:0030900 IMP forebrain development
GO:0032355 IEA response to estradiol
GO:0032403 IEA protein complex binding
GO:0035259 IEA glucocorticoid receptor binding
GO:0042593 IMP glucose homeostasis
GO:0042698 IEA ovulation cycle
GO:0042826 IEA histone deacetylase binding
GO:0042974 IEA retinoic acid receptor binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045599 IMP negative regulation of fat cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046965 IEA retinoid X receptor binding
GO:0047485 IEA protein N-terminus binding
GO:0050872 IMP white fat cell differentiation
GO:0060206 IEA estrous cycle phase
GO:0060509 IGI Type I pneumocyte differentiation
GO:0072365 IEA regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000966 ncor2 protein_coding Danio_rerio
ENSG00000196498 NCOR2 nuclear receptor corepressor 2 protein_coding Homo_sapiens

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