ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031167 Rbm3 10090 - X:8138975-8145880 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040010 Rbm3-005 8138978-8145697 protein_coding
  ENSMUST00000115615 Rbm3-002 8142361-8145723 protein_coding
  ENSMUST00000115616 Rbm3-004 8142368-8145773 protein_coding
  ENSMUST00000115617 Rbm3-003 8142368-8145696 protein_coding
  ENSMUST00000115619 Rbm3-011 8140784-8145679 protein_coding
  ENSMUST00000115621 Rbm3-001 8142359-8145880 protein_coding
  ENSMUST00000129947 Rbm3-007 8142472-8145696 nonsense_mediated_decay
  ENSMUST00000141629 Rbm3-006 8143028-8145697 nonsense_mediated_decay
  ENSMUST00000141925 Rbm3-009 8142890-8145722 retained_intron
  ENSMUST00000145450 Rbm3-008 8144474-8145759 retained_intron
  ENSMUST00000155599 Rbm3-010 8138975-8142918 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000115615ENSMUST00000115616ENSMUST00000115617ENSMUST00000115621ENSMUST00000141925
Transcript ID C166 Tie2+ EC mES
ENSMUST00000115615 27.715±4.54 93.485±40.67 46.590±3.28
ENSMUST00000115616 29.058±7.66 101.982±49.79 32.461±3.11
ENSMUST00000115617 N/A 49.093±0.00 N/A
ENSMUST00000115621 10.743±0.00 101.713±0.93 58.747±1.55
ENSMUST00000141925 10.185±1.31 7.640±0.00 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006412 IDA translation
GO:0006417 IDA regulation of translation
GO:0009409 IDA response to cold
GO:0015934 ISS large ribosomal subunit
GO:0030425 ISS dendrite
GO:0035196 IDA production of miRNAs involved in gene silencing by miRNA
GO:0043023 IPI ribosomal large subunit binding
GO:0044822 IEA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013351 cirbpb protein_coding Danio_rerio
ENSG00000102317 RBM3 RNA binding motif (RNP1, RRM) protein 3 protein_coding Homo_sapiens

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