ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032376 Usp3 10090 - 9:66514637-66593142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034940 Usp3-004 66517877-66592958 retained_intron
  ENSMUST00000098613 Usp3-002 66517227-66593036 protein_coding
  ENSMUST00000124519 Usp3-006 66545462-66566926 retained_intron
  ENSMUST00000124694 Usp3-007 66526976-66540351 processed_transcript
  ENSMUST00000127569 Usp3-001 66514637-66593142 protein_coding
  ENSMUST00000132255 Usp3-010 66518249-66520339 retained_intron
  ENSMUST00000139547 Usp3-003 66516234-66593000 nonsense_mediated_decay
  ENSMUST00000139952 Usp3-005 66547867-66576038 processed_transcript
  ENSMUST00000150840 Usp3-009 66518408-66520820 retained_intron
  ENSMUST00000154476 Usp3-008 66526661-66530402 retained_intron
  ENSMUST00000174387 Usp3-011 66518075-66593006 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000034940ENSMUST00000098613ENSMUST00000127569ENSMUST00000139547ENSMUST00000139952ENSMUST00000174387
Transcript ID C166 Tie2+ EC mES
ENSMUST00000034940 N/A 4.765±2.10 N/A
ENSMUST00000098613 2.827±0.44 8.162±0.38 5.116±0.59
ENSMUST00000127569 N/A 3.406±1.44 3.179±0.31
ENSMUST00000139547 4.298±0.24 1.775±0.41 3.651±0.63
ENSMUST00000139952 N/A 38.680±10.19 N/A
ENSMUST00000174387 6.828±0.92 13.111±6.32 3.107±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004OX CIL_0004OX_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000278 IEA mitotic cell cycle
GO:0000790 IEA nuclear chromatin
GO:0001046 IEA core promoter sequence-specific DNA binding
GO:0003682 IEA chromatin binding
GO:0004221 IEA ubiquitin thiolesterase activity
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0008270 IEA zinc ion binding
GO:0016578 IEA histone deubiquitination
GO:0031647 IEA regulation of protein stability
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0042393 IEA histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045641 usp3 protein_coding Danio_rerio
ENSG00000140455 USP3 ubiquitin specific peptidase 3 protein_coding Homo_sapiens

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