ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035033 Tbr1 10090 + 2:61802930-61814114 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048934 Tbr1-001 61804453-61814114 protein_coding
  ENSMUST00000102737 Tbr1-002 61806262-61812531 protein_coding
  ENSMUST00000131538 Tbr1-003 61806273-61811801 processed_transcript
  ENSMUST00000136867 Tbr1-004 61802930-61804558 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000048934ENSMUST00000131538ENSMUST00000136867
Transcript ID C166 Tie2+ EC mES
ENSMUST00000048934 0.017±0.01 0.172±0.00 0.043±0.02
ENSMUST00000131538 0.034±0.00 0.036±0.02 0.053±0.03
ENSMUST00000136867 N/A N/A 0.105±0.08

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008JH CIL_0008JH_0002 VISTA
CIL_0005L1 CIL_0005L1_0002 CGP
CIL_0003AH CIL_0003AH_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007411 IMP axon guidance
GO:0010092 IMP specification of organ identity
GO:0010468 IMP regulation of gene expression
GO:0010975 IMP regulation of neuron projection development
GO:0021902 IGI commitment of neuronal cell to specific neuron type in forebrain
GO:0030182 IMP neuron differentiation
GO:0030902 IMP hindbrain development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004712 tbr1b protein_coding Danio_rerio
ENSG00000136535 TBR1 T-box, brain, 1 protein_coding Homo_sapiens

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