ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038227 Hoxa9 10090 - 6:52223100-52231089 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048680 Hoxa9-001 52223100-52227370 protein_coding
  ENSMUST00000114425 Hoxa9-002 52224121-52226189 protein_coding
  ENSMUST00000154641 Hoxa9-004 52223963-52231089 processed_transcript
  ENSMUST00000156540 Hoxa9-003 52224323-52230279 processed_transcript
  ENSMUST00000174115 Hoxa9-005 52228247-52230532 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000048680ENSMUST00000114425ENSMUST00000154641ENSMUST00000174115
Transcript ID C166 Tie2+ EC mES
ENSMUST00000048680 0.009±0.00 0.901±0.66 0.062±0.01
ENSMUST00000114425 N/A 5.007±3.38 0.254±0.18
ENSMUST00000154641 0.042±0.01 N/A 0.074±0.00
ENSMUST00000174115 N/A 0.209±0.00 0.074±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007OD CIL_0007OD_0003 UCNEbase
CIL_0008QL CIL_0008QL_0002 VISTA
CIL_000911 CIL_000911_0002 VISTA
CIL_000811 CIL_000811_0002 VISTA
CIL_00097P CIL_00097P_0002 VISTA
CIL_0003PA CIL_0003PA_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IGI spermatogenesis
GO:0007338 IGI single fertilization
GO:0008584 IGI male gonad development
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0019899 IEA enzyme binding
GO:0030879 IGI mammary gland development
GO:0035115 IGI embryonic forelimb morphogenesis
GO:0042118 IEA endothelial cell activation
GO:0043565 IEA sequence-specific DNA binding
GO:0045638 IDA negative regulation of myeloid cell differentiation
GO:0048706 IGI embryonic skeletal system development
GO:0060065 IGI uterus development
GO:0060216 IGI definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056819 hoxa9b protein_coding Danio_rerio
ENSG00000078399 HOXA9 homeobox A9 protein_coding Homo_sapiens

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