ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038593 Tctn1 10090 - 5:122237848-122264460 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000111738 Tctn1-001 122237848-122264460 protein_coding
  ENSMUST00000137118 Tctn1-003 122248440-122254566 retained_intron
  ENSMUST00000141281 Tctn1-002 122241287-122264460 nonsense_mediated_decay
  ENSMUST00000176677 Tctn1-006 122245571-122251678 processed_transcript
  ENSMUST00000177148 Tctn1-005 122252324-122264415 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000111738ENSMUST00000141281ENSMUST00000177148
Transcript ID C166 Tie2+ EC mES
ENSMUST00000111738 1.490±0.41 0.607±0.24 1.369±0.06
ENSMUST00000141281 1.370±0.14 1.187±0.23 N/A
ENSMUST00000177148 N/A 0.833±0.00 1.144±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000903 CIL_000903_0002 VISTA
CIL_0008YU CIL_0008YU_0002 VISTA
CIL_0004PJ CIL_0004PJ_0002 CGP
CIL_0004PK CIL_0004PK_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001841 IMP neural tube formation
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0016020 IDA membrane
GO:0021523 IMP somatic motor neuron differentiation
GO:0021537 IMP telencephalon development
GO:0021904 IMP dorsal/ventral neural tube patterning
GO:0021956 IMP central nervous system interneuron axonogenesis
GO:0035869 IMP ciliary transition zone
GO:0036038 IDA TCTN-B9D complex
GO:0060271 IMP cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078447 tctn1 protein_coding Danio_rerio
ENSG00000204852 TCTN1 tectonic family member 1 protein_coding Homo_sapiens

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