ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038700 Hoxb5 10090 + 11:96303336-96306121 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049272 Hoxb5-001 96303512-96306120 protein_coding
  ENSMUST00000190470 Hoxb5-002 96303336-96306121 retained_intron

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000049272
Transcript ID C166 Tie2+ EC mES
ENSMUST00000049272 0.019±0.00 12.904±6.41 16.380±9.79

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007ZM CIL_0007ZM_0002 VISTA
CIL_0000W8 CIL_0000W8_0003 CGP
CIL_0004DH CIL_0004DH_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0045446 IDA endothelial cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013057 hoxb5a protein_coding Danio_rerio
ENSDARG00000054030 hoxb5b protein_coding Danio_rerio
ENSG00000120075 HOXB5 homeobox B5 protein_coding Homo_sapiens

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