ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038777 Sema6c 10090 + 3:95160457-95174024 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090821 Sema6c-004 95160505-95174024 protein_coding
  ENSMUST00000090823 Sema6c-001 95160505-95174024 protein_coding
  ENSMUST00000107217 Sema6c-006 95164306-95174024 protein_coding
  ENSMUST00000126597 Sema6c-012 95170805-95171976 retained_intron
  ENSMUST00000130662 Sema6c-011 95168212-95170140 processed_transcript
  ENSMUST00000130814 Sema6c-007 95160494-95164427 processed_transcript
  ENSMUST00000131620 Sema6c-010 95160494-95168346 nonsense_mediated_decay
  ENSMUST00000131742 Sema6c-009 95160501-95164481 protein_coding
  ENSMUST00000134125 Sema6c-003 95160505-95174024 retained_intron
  ENSMUST00000141607 Sema6c-013 95170323-95171895 retained_intron
  ENSMUST00000142306 Sema6c-008 95160457-95164542 processed_transcript
  ENSMUST00000142449 Sema6c-002 95160505-95174024 nonsense_mediated_decay
  ENSMUST00000168321 Sema6c-014 95164306-95173862 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000090821ENSMUST00000107217ENSMUST00000130662ENSMUST00000134125ENSMUST00000141607ENSMUST00000142449ENSMUST00000168321
Transcript ID C166 Tie2+ EC mES
ENSMUST00000090821 N/A 0.468±0.24 1.024±0.00
ENSMUST00000107217 N/A 0.016±0.00 0.836±0.27
ENSMUST00000130662 1.599±0.00 1.284±0.00 N/A
ENSMUST00000134125 N/A 0.010±0.00 N/A
ENSMUST00000141607 N/A 0.150±0.00 N/A
ENSMUST00000142449 0.480±0.15 0.219±0.00 N/A
ENSMUST00000168321 0.605±0.25 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000581 CIL_000581_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0007411 IEA axon guidance
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030215 IPI semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000189 sema6e protein_coding Danio_rerio
ENSDARG00000002748 sema6d protein_coding Danio_rerio
ENSG00000143434 SEMA6C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C protein_coding Homo_sapiens

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