ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042726 Trafd1 10090 - 5:121371725-121385632 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042312 Trafd1-001 121371725-121385632 protein_coding
  ENSMUST00000120784 Trafd1-002 121371730-121385571 protein_coding
  ENSMUST00000126550 Trafd1-008 121384161-121385360 processed_transcript
  ENSMUST00000133138 Trafd1-004 121371725-121373131 retained_intron
  ENSMUST00000146185 Trafd1-005 121379597-121385629 protein_coding
  ENSMUST00000152265 Trafd1-007 121378631-121385409 protein_coding
  ENSMUST00000155379 Trafd1-006 121378877-121385577 protein_coding
  ENSMUST00000156158 Trafd1-003 121371725-121378823 nonsense_mediated_decay
  ENSMUST00000202064 Trafd1-009 121371732-121373474 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000042312ENSMUST00000120784ENSMUST00000156158ENSMUST00000202064
Transcript ID C166 Tie2+ EC mES
ENSMUST00000042312 6.416±1.84 4.932±0.36 3.986±1.08
ENSMUST00000120784 7.377±0.68 3.275±1.19 1.857±0.00
ENSMUST00000156158 1.925±0.00 1.465±0.45 1.548±0.38
ENSMUST00000202064 N/A 31.933±9.27 11.386±5.43

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0008270 IEA zinc ion binding
GO:0034097 IEA response to cytokine
GO:0045824 IMP negative regulation of innate immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075123 trafd1 protein_coding Danio_rerio
ENSG00000135148 TRAFD1 TRAF-type zinc finger domain containing 1 protein_coding Homo_sapiens

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