ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045193 Cirbp 10090 + 10:80165985-80172786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054666 Cirbp-005 80167840-80172786 protein_coding
  ENSMUST00000105365 Cirbp-001 80167778-80171655 protein_coding
  ENSMUST00000139935 Cirbp-004 80167863-80170129 retained_intron
  ENSMUST00000140774 Cirbp-002 80167886-80171137 retained_intron
  ENSMUST00000147190 Cirbp-006 80171982-80172698 retained_intron
  ENSMUST00000151321 Cirbp-003 80170227-80171204 retained_intron
  ENSMUST00000154726 Cirbp-007 80165985-80170316 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000054666ENSMUST00000105365ENSMUST00000140774
Transcript ID C166 Tie2+ EC mES
ENSMUST00000054666 2.925±0.31 N/A N/A
ENSMUST00000105365 4.607±0.95 32.171±6.65 8.308±3.64
ENSMUST00000140774 2.074±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0000QP CIL_0000QP_0002 CGP
CIL_0000QS CIL_0000QS_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0009409 IEA response to cold
GO:0009411 ISS response to UV
GO:0010494 IDA cytoplasmic stress granule
GO:0017148 IDA negative regulation of translation
GO:0030371 IDA translation repressor activity
GO:0034063 IDA stress granule assembly
GO:0045727 ISS positive regulation of translation
GO:0048255 ISS mRNA stabilization
GO:0070181 ISS small ribosomal subunit rRNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013351 cirbpb protein_coding Danio_rerio
ENSG00000099622 CIRBP cold inducible RNA binding protein protein_coding Homo_sapiens

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