ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047407 Tgif1 10090 - 17:70844205-70853546 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059775 Tgif1-001 70844205-70851207 protein_coding
  ENSMUST00000118283 Tgif1-003 70844211-70853546 protein_coding
  ENSMUST00000125329 Tgif1-007 70848374-70849807 processed_transcript
  ENSMUST00000127719 Tgif1-004 70844728-70849790 protein_coding
  ENSMUST00000132825 Tgif1-005 70846295-70851131 processed_transcript
  ENSMUST00000134654 Tgif1-006 70846181-70849644 protein_coding
  ENSMUST00000135007 Tgif1-009 70844981-70847170 protein_coding
  ENSMUST00000156484 Tgif1-008 70844869-70846326 protein_coding
  ENSMUST00000166395 Tgif1-002 70844211-70851734 protein_coding
  ENSMUST00000172229 Tgif1-201 70844205-70849790 protein_coding
  ENSMUST00000186358 Tgif1-011 70844211-70851069 protein_coding
  ENSMUST00000190687 Tgif1-010 70846670-70849814 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000059775ENSMUST00000118283ENSMUST00000172229ENSMUST00000186358
Transcript ID C166 Tie2+ EC mES
ENSMUST00000059775 23.214±1.19 34.810±18.35 7.653±1.08
ENSMUST00000118283 N/A 0.642±0.00 2.635±0.43
ENSMUST00000172229 N/A 0.561±0.00 2.083±0.00
ENSMUST00000186358 N/A 0.617±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0006KX CIL_0006KX_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001843 IMP neural tube closure
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007368 IMP determination of left/right symmetry
GO:0008285 IMP negative regulation of cell proliferation
GO:0009953 IMP dorsal/ventral pattern formation
GO:0010470 IGI regulation of gastrulation
GO:0010629 IEA negative regulation of gene expression
GO:0038092 IGI nodal signaling pathway
GO:0042493 IEA response to drug
GO:0045666 IDA positive regulation of neuron differentiation
GO:0048146 IMP positive regulation of fibroblast proliferation
GO:0048387 IMP negative regulation of retinoic acid receptor signaling pathway
GO:0060041 IDA retina development in camera-type eye
GO:0070410 IEA co-SMAD binding
GO:0071363 IEA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059337 tgif1 protein_coding Danio_rerio
ENSG00000177426 TGIF1 TGFB-induced factor homeobox 1 protein_coding Homo_sapiens

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