ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047638 Nr1h4 10090 - 10:89454234-89533585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058126 Nr1h4-001 89454234-89506649 protein_coding
  ENSMUST00000105296 Nr1h4-201 89454234-89506658 protein_coding
  ENSMUST00000105297 Nr1h4-002 89454373-89533585 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000058126ENSMUST00000105296ENSMUST00000105297
Transcript ID C166 Tie2+ EC mES
ENSMUST00000058126 N/A 0.005±0.00 0.018±0.00
ENSMUST00000105296 N/A 0.010±0.00 N/A
ENSMUST00000105297 0.556±0.18 0.047±0.00 0.043±0.03

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001080 IC nitrogen catabolite activation of transcription from RNA polymerase II promoter
GO:0001190 IEA RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IGI sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004872 IEA receptor activity
GO:0004879 IMP ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0004887 IEA thyroid hormone receptor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0006109 IEA regulation of carbohydrate metabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0008206 IMP bile acid metabolic process
GO:0008270 IEA zinc ion binding
GO:0009749 IEA response to glucose
GO:0030522 IMP intracellular receptor signaling pathway
GO:0032052 IMP bile acid binding
GO:0032496 IEA response to lipopolysaccharide
GO:0034255 IMP regulation of urea metabolic process
GO:0038181 IEA bile acid receptor activity
GO:0038185 IEA intracellular bile acid receptor signaling pathway
GO:0042277 IEA peptide binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046965 IDA retinoid X receptor binding
GO:0048565 IEA digestive tract development
GO:0070858 IEA negative regulation of bile acid biosynthetic process
GO:0071417 IMP cellular response to organonitrogen compound
GO:1902122 IEA chenodeoxycholic acid binding
GO:1903413 IMP cellular response to bile acid
GO:2000213 IMP positive regulation of glutamate metabolic process
GO:2001250 IMP positive regulation of ammonia assimilation cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057741 nr1h4 protein_coding Danio_rerio
ENSG00000012504 NR1H4 nuclear receptor subfamily 1, group H, member 4 protein_coding Homo_sapiens

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