ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059834 Sclt1 10090 - 3:41626720-41742514 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026866 Sclt1-001 41626720-41742514 protein_coding
  ENSMUST00000140373 Sclt1-006 41629402-41673275 retained_intron
  ENSMUST00000142908 Sclt1-009 41627106-41630125 retained_intron
  ENSMUST00000146125 Sclt1-004 41626942-41742028 nonsense_mediated_decay
  ENSMUST00000148769 Sclt1-002 41626942-41742481 nonsense_mediated_decay
  ENSMUST00000154773 Sclt1-007 41657226-41664003 nonsense_mediated_decay
  ENSMUST00000156279 Sclt1-005 41673784-41717796 retained_intron
  ENSMUST00000191629 Sclt1-008 41741519-41742405 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000026866ENSMUST00000140373ENSMUST00000146125ENSMUST00000148769
Transcript ID C166 Tie2+ EC mES
ENSMUST00000026866 1.274±0.48 2.396±0.86 2.218±0.68
ENSMUST00000140373 N/A 0.540±0.00 0.623±0.00
ENSMUST00000146125 0.465±0.13 1.899±0.00 N/A
ENSMUST00000148769 0.385±0.00 1.187±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00001M CIL_00001M_0002 CGP
CIL_0006YI CIL_0006YI_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005814 ISS centriole
GO:0008022 IEA protein C-terminus binding
GO:0015630 IEA microtubule cytoskeleton
GO:0017080 IEA sodium channel regulator activity
GO:0030276 IEA clathrin binding
GO:0042384 ISS cilium assembly
GO:0045162 IEA clustering of voltage-gated sodium channels
GO:0070062 IEA extracellular vesicular exosome
GO:0071439 IEA clathrin complex
GO:0097539 IEA ciliary transition fiber

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057248 sclt1 protein_coding Danio_rerio
ENSG00000151466 SCLT1 sodium channel and clathrin linker 1 protein_coding Homo_sapiens

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