ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074129 Rpl13a 10090 - 7:45125558-45136231 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102669 Rpl13a-009 45125922-45128720 nonsense_mediated_decay
  ENSMUST00000124300 Rpl13a-011 45125922-45136231 protein_coding
  ENSMUST00000125074 Rpl13a-006 45126003-45128735 processed_transcript
  ENSMUST00000125936 Rpl13a-008 45125923-45126879 retained_intron
  ENSMUST00000131697 Rpl13a-005 45126765-45128735 retained_intron
  ENSMUST00000135681 Rpl13a-004 45126478-45126987 processed_transcript
  ENSMUST00000138887 Rpl13a-007 45126478-45127823 retained_intron
  ENSMUST00000141807 Rpl13a-002 45126478-45128736 processed_transcript
  ENSMUST00000142239 Rpl13a-010 45125560-45128735 processed_transcript
  ENSMUST00000150350 Rpl13a-001 45125558-45128748 protein_coding
  ENSMUST00000152970 Rpl13a-003 45125922-45128649 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000102669ENSMUST00000125936ENSMUST00000141807ENSMUST00000142239ENSMUST00000150350
Transcript ID C166 Tie2+ EC mES
ENSMUST00000102669 368.816±33.41 317.616±311.38 N/A
ENSMUST00000125936 460.697±52.76 158.603±86.16 1837.571±855.27
ENSMUST00000141807 848.082±134.77 N/A N/A
ENSMUST00000142239 N/A N/A 372.628±0.00
ENSMUST00000150350 297.100±31.55 808.640±702.30 1313.287±158.98

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005125 IEA cytokine activity
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit
GO:0016020 IEA membrane
GO:0017148 IDA negative regulation of translation
GO:0030529 ISO ribonucleoprotein complex
GO:0032496 IMP response to lipopolysaccharide
GO:0032844 IMP regulation of homeostatic process
GO:0048246 IMP macrophage chemotaxis
GO:0060425 IMP lung morphogenesis
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044093 rpl13a protein_coding Danio_rerio
ENSG00000142541 RPL13A ribosomal protein L13a protein_coding Homo_sapiens

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