ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150350 Rpl13a-001 ENSMUSG00000074129 10090 - 7:45125558-45128748 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000150350
Transcript ID C166 Tie2+ EC mES
ENSMUST00000150350 297.100±31.55 808.640±702.30 1313.287±158.98

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit
GO:0017148 IDA negative regulation of translation
GO:0030529 ISO ribonucleoprotein complex
GO:0032496 IMP response to lipopolysaccharide
GO:0032844 IMP regulation of homeostatic process
GO:0048246 IMP macrophage chemotaxis
GO:0060425 IMP lung morphogenesis
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391857 RPL13A-001 protein_coding Homo_sapiens 0 817
ENST00000430133 RPL13AP6-001 processed_pseudogene Homo_sapiens 0 638
ENST00000439189 RPL13AP5-001 processed_pseudogene Homo_sapiens 0 726
ENST00000467825 RPL13A-009 protein_coding Homo_sapiens 0 652
ENST00000472481 RPL13A-007 retained_intron Homo_sapiens 0 451
ENST00000476268 RPL13A-003 retained_intron Homo_sapiens 1e-23 115
ENST00000477613 RPL13A-008 processed_transcript Homo_sapiens 0 678
ENST00000478813 RP11-941H19.1-001 processed_pseudogene Homo_sapiens 0 520
ENST00000479992 RPL13A-006 retained_intron Homo_sapiens 0 231
ENST00000484279 RPL13A-004 nonsense_mediated_decay Homo_sapiens 0 627
ENST00000486930 RPL13A-005 retained_intron Homo_sapiens 0 316
ENST00000487479 RPL13AP3-001 transcribed_processed_pseudogene Homo_sapiens 0 601
ENST00000488946 RPL13A-002 retained_intron Homo_sapiens 2e-23 115
ENST00000494676 RPL13AP3-002 processed_transcript Homo_sapiens 0 586
ENST00000495623 RP11-627K11.1-001 processed_pseudogene Homo_sapiens 0 676
ENST00000534211 RP11-140L24.3-001 processed_pseudogene Homo_sapiens 0 392
ENST00000624069 RPL13A-013 nonsense_mediated_decay Homo_sapiens 0 750

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