ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000092607 Scnm1 10090 - 3:95129536-95134011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000172572 Scnm1-001 95129536-95134011 protein_coding
  ENSMUST00000173462 Scnm1-003 95129729-95134011 protein_coding
  ENSMUST00000173527 Scnm1-005 95130293-95133939 retained_intron
  ENSMUST00000174508 Scnm1-008 95129719-95130684 retained_intron
  ENSMUST00000174835 Scnm1-007 95129726-95131266 processed_transcript
  ENSMUST00000174859 Scnm1-004 95129720-95133773 retained_intron
  ENSMUST00000196728 Scnm1-009 95129724-95130461 retained_intron
  ENSMUST00000199730 Scnm1-010 95129722-95130288 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000172572ENSMUST00000173462ENSMUST00000173527ENSMUST00000174835
Transcript ID C166 Tie2+ EC mES
ENSMUST00000172572 5.996±0.68 8.756±3.80 12.682±0.97
ENSMUST00000173462 5.491±0.77 11.388±5.82 N/A
ENSMUST00000173527 N/A 2.578±0.00 N/A
ENSMUST00000174835 N/A N/A 9.443±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0003MO CIL_0003MO_0002 CGP
CIL_0000UG CIL_0000UG_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IMP RNA splicing
GO:0019899 IEA enzyme binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003027 scnm1 protein_coding Danio_rerio
ENSG00000163156 SCNM1 sodium channel modifier 1 protein_coding Homo_sapiens

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