ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030003 Exosc3-001 ENSMUSG00000028322 10090 - 4:45316613-45320629 protein_coding

Mus musculus Ensembl GRCm38

Genome
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000030003
Transcript ID C166 Tie2+ EC mES
ENSMUST00000030003 33.746±3.24 15.172±7.14 14.397±0.67

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000176 IEA nuclear exosome (RNase complex)
GO:0000177 IEA cytoplasmic exosome (RNase complex)
GO:0000178 ISS exosome (RNase complex)
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0004527 IEA exonuclease activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0035327 IEA transcriptionally active chromatin
GO:0043928 IEA exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0045006 IEA DNA deamination
GO:0045190 IMP isotype switching
GO:0045830 IMP positive regulation of isotype switching
GO:0071034 IEA CUT catabolic process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327304 EXOSC3-001 protein_coding Homo_sapiens 0 854
ENST00000396521 EXOSC3-002 protein_coding Homo_sapiens 0 416
ENST00000448649 EXOSC3P1-001 processed_pseudogene Homo_sapiens 0 555
ENST00000465229 EXOSC3-005 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000465860 EXOSC3-007 retained_intron Homo_sapiens 0 468
ENST00000482614 EXOSC3-008 processed_transcript Homo_sapiens 0 516
ENST00000489414 EXOSC3-009 processed_transcript Homo_sapiens 0 640
ENST00000490516 EXOSC3-004 processed_transcript Homo_sapiens 0 220
ENST00000496910 EXOSC3-006 retained_intron Homo_sapiens 0 261
ENST00000540557 RP11-613M10.9-001 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000594464 EXOSC3P2-001 processed_pseudogene Homo_sapiens 0 542

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