ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000002829 SEMA3F-001 ENSG00000001617 9606 + 3:50155129-50189075 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000002829
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000002829 26.910±0.00 37.462±13.59 32.534±0.00 24.714±8.99

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IEA neural crest cell migration
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005615 TAS extracellular space
GO:0007275 IEA multicellular organismal development
GO:0007411 IDA axon guidance
GO:0016020 IEA membrane
GO:0021612 IEA facial nerve structural organization
GO:0021637 IEA trigeminal nerve structural organization
GO:0021675 ISS nerve development
GO:0021785 IEA branchiomotor neuron axon guidance
GO:0036486 IEA ventral trunk neural crest cell migration
GO:0045499 IDA chemorepellent activity
GO:0048843 IEA negative regulation of axon extension involved in axon guidance
GO:0048846 ISS axon extension involved in axon guidance
GO:0050919 IEA negative chemotaxis
GO:0061549 ISS sympathetic ganglion development
GO:0097490 ISS sympathetic neuron projection extension
GO:0097491 ISS sympathetic neuron projection guidance
GO:1901166 IEA neural crest cell migration involved in autonomic nervous system development
GO:1902285 ISS semaphorin-plexin signaling pathway involved in neuron projection guidance
GO:1902287 IEA semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000192727 Sema3f-012 protein_coding Mus_musculus 0 2964
ENSMUST00000080560 Sema3f-001 protein_coding Mus_musculus 0 2708
ENSMUST00000194039 Sema3f-010 nonsense_mediated_decay Mus_musculus 0 1642
ENSMUST00000193665 Sema3f-002 processed_transcript Mus_musculus 0 1306
ENSMUST00000194424 Sema3f-013 nonsense_mediated_decay Mus_musculus 0 784
ENSMUST00000193108 Sema3f-006 protein_coding Mus_musculus 0 638
ENSMUST00000192783 Sema3f-003 protein_coding Mus_musculus 0 575
ENSMUST00000192712 Sema3f-007 retained_intron Mus_musculus 0 558
ENSMUST00000195267 Sema3f-008 retained_intron Mus_musculus 0 484
ENSMUST00000192157 Sema3f-009 retained_intron Mus_musculus 0 405
ENSMUST00000195023 Sema3f-004 protein_coding Mus_musculus 0 363
ENSMUST00000194846 Sema3f-011 retained_intron Mus_musculus 0 235

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