ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: RNA binding motif protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347869 RBM5-001 ENSG00000003756 9606 + 3:50088908-50119021 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000347869
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000347869 45.544±0.00 32.413±11.67 101.363±0.00 34.162±0.00 40.095±26.90

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000245 IDA spliceosomal complex assembly
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 TAS DNA binding
GO:0003723 TAS RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0006396 TAS RNA processing
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0008285 TAS negative regulation of cell proliferation
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0043065 IDA positive regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182659 Rbm5-001 protein_coding Mus_musculus 0 3873
ENSMUST00000035199 Rbm5-004 protein_coding Mus_musculus 0 3819
ENSMUST00000183307 Rbm5-006 retained_intron Mus_musculus 0 3005
ENSMUST00000182371 Rbm5-002 nonsense_mediated_decay Mus_musculus 0 3003
ENSMUST00000194801 Rbm5-027 retained_intron Mus_musculus 0 2743
ENSMUST00000182421 Rbm5-003 nonsense_mediated_decay Mus_musculus 0 2287
ENSMUST00000182304 Rbm5-011 protein_coding Mus_musculus 0 1225
ENSMUST00000182007 Rbm5-008 retained_intron Mus_musculus 0 817
ENSMUST00000182332 Rbm5-016 retained_intron Mus_musculus 0 756
ENSMUST00000192130 Rbm5-025 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000193342 Rbm5-024 nonsense_mediated_decay Mus_musculus 0 693
ENSMUST00000182422 Rbm5-013 retained_intron Mus_musculus 0 680
ENSMUST00000182022 Rbm5-012 protein_coding Mus_musculus 0 647
ENSMUST00000182073 Rbm5-009 retained_intron Mus_musculus 0 590
ENSMUST00000182026 Rbm5-018 protein_coding Mus_musculus 0 571
ENSMUST00000183248 Rbm5-028 protein_coding Mus_musculus 0 538
ENSMUST00000182856 Rbm5-014 retained_intron Mus_musculus 0 459
ENSMUST00000182518 Rbm5-005 retained_intron Mus_musculus 0 372
ENSMUST00000194682 Rbm5-023 retained_intron Mus_musculus 0 213
ENSDART00000155483 si:ch211-161c3.6-001 protein_coding Danio_rerio 0 202
ENSMUST00000182836 Rbm5-015 retained_intron Mus_musculus 4e-16 92
ENSMUST00000182792 Rbm5-020 retained_intron Mus_musculus 0.0000000002 73

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