ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info

Description: calsequestrin 1 (fast-twitch, skeletal muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368078 CASQ1-001 ENSG00000143318 9606 + 1:160190556-160201886 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; HAoECHHSECHUVECENST00000368078
Transcript ID HAoEC HHSEC HUVEC
ENST00000368078 0.038±0.02 0.067±0.00 0.052±0.05

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA:IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 ISS mitochondrial matrix
GO:0005783 NAS endoplasmic reticulum
GO:0005790 TAS smooth endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0007029 IEA endoplasmic reticulum organization
GO:0007519 IEA skeletal muscle tissue development
GO:0009408 IEA response to heat
GO:0010033 IEA response to organic substance
GO:0010880 IEA regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0014802 IEA terminal cisterna
GO:0014804 IEA terminal cisterna lumen
GO:0014809 ISS regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion
GO:0014870 IEA response to muscle inactivity
GO:0014894 IEA response to denervation involved in regulation of muscle adaptation
GO:0016529 ISS sarcoplasmic reticulum
GO:0030016 IEA myofibril
GO:0030315 IEA T-tubule
GO:0031674 IEA I band
GO:0033017 TAS sarcoplasmic reticulum membrane
GO:0033018 ISS sarcoplasmic reticulum lumen
GO:0034220 TAS ion transmembrane transport
GO:0042383 IEA sarcolemma
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045214 ISS sarcomere organization
GO:0051258 IDA protein polymerization
GO:0051282 IEA regulation of sequestering of calcium ion
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003554 Casq1-001 protein_coding Mus_musculus 0 1749
ENSMUST00000170638 Casq1-002 retained_intron Mus_musculus 0 514
ENSMUST00000170700 Casq1-003 protein_coding Mus_musculus 0 283

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