ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: serine/arginine-rich splicing factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373795 SRSF4-001 ENSG00000116350 9606 - 1:29147743-29181987 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000373795
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000373795 4.791±2.38 9.435±3.61 13.507±0.00 17.855±10.33

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053819 Srsf4-001 protein_coding Mus_musculus 0 2109
ENSMUST00000030743 Srsf4-002 retained_intron Mus_musculus 0 1814
ENSMUST00000134943 Srsf4-004 nonsense_mediated_decay Mus_musculus 0 619
ENSMUST00000129966 Srsf4-003 nonsense_mediated_decay Mus_musculus 0 276
ENSMUST00000130411 Srsf6-001 protein_coding Mus_musculus 0 222
ENSMUST00000017065 Srsf6-002 nonsense_mediated_decay Mus_musculus 0 213
ENSMUST00000193611 Srsf6-004 retained_intron Mus_musculus 0 213

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