ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: high mobility group box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399489 HMGB1-009 ENSG00000189403 9606 - 13:30460895-30464247 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; HUVECENST00000399489
Transcript ID HUVEC
ENST00000399489 5.878±2.82

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 795
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 795
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 782
ENSMUST00000139443 Hmgb1-006 protein_coding Mus_musculus 0 673
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 673
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 654
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 643
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000179821 Gm5527-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000192809 Gm37164-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000162030 Gm10075-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000195073 Gm5842-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000120637 Gm13121-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000176164 Gm3307-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 566
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 555
ENSMUST00000180890 Gm26585-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000073196 Gm2710-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000190177 Gm7858-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 460
ENSMUST00000186576 Gm29124-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000182688 Gm7909-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000179328 Gm8807-201 processed_pseudogene Mus_musculus 0 435
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000155086 Hmgb1-009 retained_intron Mus_musculus 0 431
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 424
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000168653 Gm3851-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000155154 Ppm1e-002 processed_transcript Mus_musculus 0 303
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000123645 Hmgb1-005 retained_intron Mus_musculus 0 246
ENSMUST00000189012 Gm5368-001 processed_pseudogene Mus_musculus 5.00264e-43 180
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 1e-18 99

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