ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: SMG9 nonsense mediated mRNA decay factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000105771 SMG9 9606 - 19:43727992-43754990 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270066 SMG9-001 43727992-43754990 protein_coding
  ENST00000594081 SMG9-012 43733344-43734079 retained_intron
  ENST00000595700 SMG9-003 43737850-43754867 retained_intron
  ENST00000596714 SMG9-007 43747777-43754601 protein_coding
  ENST00000597586 SMG9-008 43747655-43754598 protein_coding
  ENST00000597598 SMG9-004 43734460-43747734 nonsense_mediated_decay
  ENST00000598860 SMG9-011 43733424-43734825 retained_intron
  ENST00000598886 SMG9-010 43747797-43754922 retained_intron
  ENST00000599804 SMG9-009 43747762-43754634 protein_coding
  ENST00000600097 SMG9-013 43731390-43733110 retained_intron
  ENST00000601170 SMG9-002 43732270-43754962 protein_coding
  ENST00000601925 SMG9-006 43747677-43754627 protein_coding
  ENST00000602222 SMG9-005 43747479-43754634 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000270066ENST00000595700ENST00000597598ENST00000598860ENST00000598886ENST00000600097ENST00000601170
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000270066 5.706±1.04 0.902±0.46 2.319±0.00 1.625±0.00 1.272±0.64
ENST00000595700 N/A 0.663±0.00 N/A N/A 1.003±0.51
ENST00000597598 N/A N/A N/A N/A 1.318±0.00
ENST00000598860 N/A N/A 12.490±0.00 N/A N/A
ENST00000598886 N/A N/A N/A N/A 3.220±2.54
ENST00000600097 76.615±12.08 10.614±4.00 30.712±0.00 19.974±0.00 11.212±5.63
ENST00000601170 3.571±0.00 4.365±2.82 N/A 7.613±0.00 4.612±2.61

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IMP:IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076627 smg9 protein_coding Danio_rerio
ENSMUSG00000002210 Smg9 protein_coding Mus_musculus

Loading