ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: SMG9 nonsense mediated mRNA decay factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000601170 SMG9-002 ENSG00000105771 9606 - 19:43732270-43754962 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000601170
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000601170 3.571±0.00 4.365±2.82 7.613±0.00 4.612±2.61

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IMP:IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0042802 IPI identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002280 Smg9-001 protein_coding Mus_musculus 0 1796
ENSMUST00000146381 Smg9-002 retained_intron Mus_musculus 0 874
ENSMUST00000148288 Smg9-005 retained_intron Mus_musculus 0 736
ENSMUST00000108434 Smg9-004 protein_coding Mus_musculus 0 736
ENSMUST00000146686 Smg9-006 retained_intron Mus_musculus 0 477
ENSMUST00000139481 Smg9-003 retained_intron Mus_musculus 0 331
ENSMUST00000123188 Smg9-007 protein_coding Mus_musculus 0 318

Loading