ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: AT rich interactive domain 1A (SWI-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117713 ARID1A 9606 + 1:26696033-26782104 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324856 ARID1A-001 26696033-26782104 protein_coding
  ENST00000374152 ARID1A-003 26729380-26780756 protein_coding
  ENST00000430291 ARID1A-005 26766270-26768001 retained_intron
  ENST00000430799 ARID1A-009 26771229-26781187 protein_coding
  ENST00000457599 ARID1A-002 26696404-26780817 protein_coding
  ENST00000466382 ARID1A-004 26772964-26781177 nonsense_mediated_decay
  ENST00000524572 ARID1A-007 26727708-26731318 protein_coding
  ENST00000532781 ARID1A-006 26774870-26780983 nonsense_mediated_decay
  ENST00000615191 ARID1A-201 26729380-26774901 protein_coding

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000324856ENST00000374152ENST00000430799ENST00000457599ENST00000466382ENST00000532781ENST00000615191
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000324856 0.449±0.16 2.612±1.40 7.970±0.00 6.702±3.64
ENST00000374152 N/A 1.983±0.59 N/A N/A
ENST00000430799 N/A 1.667±0.00 N/A 3.760±1.88
ENST00000457599 N/A N/A N/A 3.437±0.00
ENST00000466382 N/A N/A N/A 6.539±1.12
ENST00000532781 N/A N/A N/A 3.949±1.39
ENST00000615191 N/A N/A N/A 2.410±1.98

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007T4 CIL_0007T4_0001 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001843 IEA neural tube closure
GO:0003205 IEA cardiac chamber development
GO:0003408 IEA optic cup formation involved in camera-type eye development
GO:0003677 NAS:IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006325 IEA chromatin organization
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA:IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030520 IDA intracellular estrogen receptor signaling pathway
GO:0030521 IDA androgen receptor signaling pathway
GO:0030900 IEA forebrain development
GO:0031491 IEA nucleosome binding
GO:0042766 TAS nucleosome mobilization
GO:0042921 IDA glucocorticoid receptor signaling pathway
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048096 TAS chromatin-mediated maintenance of transcription
GO:0060674 IEA placenta blood vessel development
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex
GO:0090544 IEA BAF-type complex
GO:1901998 IEA toxin transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000007880 Arid1a protein_coding Mus_musculus

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