ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: chromobox homolog 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122565 CBX3 9606 + 7:26201162-26213356 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337620 CBX3-001 26201162-26213356 protein_coding
  ENST00000396386 CBX3-002 26201693-26213351 protein_coding
  ENST00000409747 CBX3-003 26201765-26213356 protein_coding
  ENST00000456948 CBX3-004 26201757-26208412 protein_coding
  ENST00000462165 CBX3-006 26206368-26210582 protein_coding
  ENST00000481057 CBX3-005 26208133-26212423 retained_intron
  ENST00000481300 CBX3-007 26206036-26208476 retained_intron
  ENST00000497498 CBX3-008 26202463-26211717 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000396386
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000396386 58.782±16.59 51.280±10.12 145.153±0.00 105.341±44.79

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008Q3 CIL_0008Q3_0001 VISTA
CIL_000874 CIL_000874_0001 VISTA
CIL_0002CP CIL_0002CP_0001 CGP
CIL_0009DE CIL_0009DE_0001 VISTA
CIL_0002CO CIL_0002CO_0001 CGP
CIL_0007OD CIL_0007OD_0001 UCNEbase
CIL_0002CN CIL_0002CN_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000779 ISS condensed chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005635 ISS nuclear envelope
GO:0005637 NAS nuclear inner membrane
GO:0005719 IDA nuclear euchromatin
GO:0005720 IDA nuclear heterochromatin
GO:0005819 IDA spindle
GO:0006338 NAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0019899 IPI enzyme binding
GO:0019904 IPI protein domain specific binding
GO:0031618 ISS nuclear pericentric heterochromatin
GO:0042802 IPI identical protein binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process
GO:1990226 IPI histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003860 cbx3a protein_coding Danio_rerio
ENSMUSG00000029836 Cbx3 protein_coding Mus_musculus

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